
The Microbial Ecophysiology Lab studies the microbial communities that drive iron and sulfur biogeochemical cycles in extremely acidic environments, from natural volcanic systems to industrial biomining operations. We combine cutting-edge computational and functional genomics with biochemistry and molecular microbiology to dissect the dynamics and interactions among bacteria, archaea and viruses in these ecosystems. A central focus of our work is the evolution, taxonomy and genome biology of the Acidithiobacillia class, key model microorganisms in biomining and acidic environments. Using Acidithiobacillia-dominated communities as tractable systems, we investigate microbial community assembly as an ecological and eco-evolutionary problem, asking how dispersal, selection and mobile genetic elements shape community structure, function and mineral recovery. The lab is led by Prof. Raquel Quatrini, author of over 80 scientific articles and co-editor of the first book on acidophile microbiology.

Lab Members
Research Associate Simón Beard Borquez
Postdoctoral fellow Francisco Issotta Contardo
Pedro Sepúlveda - Rebolledo
Dilanaz Arisan
PhD student, DRBC-USS Camila Rojas Villalobos
Sofía Reyes Impellizzeri
Abraham Zapata Araya
Aljandro Nicolás Pinilla Ojeda (PhageLab)
Celia Larrea Duharte
PhD student, DRIM-USS Gustavo Castro Toro
Estefanía Tisalema Guanopatín
PhD student, DRING-USS
Daniela Jara Henríquez (USS-Concepción)
Master, MBIM-USS
Catalina Lopez Kleim
Undergraduate, BIOQ-USS Catalina Muñoz Sarmiento
Guillermo Tapia Donoso
Noemí Urrea Saray
Catalina Gallardo Espíndola
Undergraduate, BIOTEC-UTEM Camilo Alarcón Barrera
Lab manager Héctor Carrasco Gallardo
Research assistant Gabriel Vergara
Priscilla Bucarey
Grants
FONDECYT-1221035: Acidic microbiomes as model systems in eco-evolutionary studies of community assembly processes (Principal Investigator)
EXPLORACION-13220230: Molecular delivery platform based on lipidic nanoparticles for acid mine drainage (AMD) microbial communities engineering and control: proof of concept (Alternate Director)
FONDECYT-1241529: Physical heterogeneity in biomining biofilms: Towards deciphering extracellular polymer production and the role of diffusible signal factors (Coinvestigator)
Collaborations
Diez B | Santiago, Chile - Universidad Mayor
Vera M | Santiago, Chile -Pontificia Universidad Católica de Chile
Moya-Beltrán A | Santiago, Chile - Universidad Tecnológica Metropolitana
Castro M | Concepción, Chile - Universidad de Concepción
Johnson DB | Bangor, UK - University of Bangor
Kucera J | Czech Republic - Masaryk University
Bertilsson S | Uppsalla, Sweden - Swedish University of Agricultural Sciences
Paredes-Sabja D | Texas, US - A&M University
Pérez-Rueda E | Mérida, Mexico - Universidad Nacional Autónoma de México
Giaveno A, Ulloa R | Neuquén, Argentina - Universidad Nacional del Comahue
Temporetti P | Bariloche, Argentina - Universidad Nacional del Comahue
M.C. Dieguez | Bariloche, Argentina - Universidad Nacional del Comahue
Latest Publication
Novel metal sites revealed by spectroscopic and structural characterization of the ferric uptake regulator from Acidithiobacillus ferrooxidans
Argandona, Yerko; Olivos, Andrea; Obando, Patricia; Imas, Francisco; Pohl, Ehmke; Quatrini, Raquel; Arenas-Salinas, Mauricio
MOBHunter: a data integration platform for identification and classification of mobile genetic elements in microbial genomes
Rojas-Villalobos, Camila; Ossandon, Francisco J.; Castillo-Vilcahuaman, Camila; Sepulveda-Rebolledo, Pedro; Castro-Salinas, David; Zapata-Araya, Abraham; Arisan, Dilanaz; Perez-Acle, Tomas; Issotta, Francisco; Quatrini, Raquel; Moya-Beltran, Ana


