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Laboratory of Microbial Ecophysiology

Lab Director

Raquel Quatrini, PhD

The Microbial Ecophysiology Lab studies the microbial communities that drive iron and sulfur biogeochemical cycles in extremely acidic environments, from natural volcanic systems to industrial biomining operations. We combine cutting-edge computational and functional genomics with biochemistry and molecular microbiology to dissect the dynamics and interactions among bacteria, archaea and viruses in these ecosystems. A central focus of our work is the evolution, taxonomy and genome biology of the Acidithiobacillia class, key model microorganisms in biomining and acidic environments. Using Acidithiobacillia-dominated communities as tractable systems, we investigate microbial community assembly as an ecological and eco-evolutionary problem, asking how dispersal, selection and mobile genetic elements shape community structure, function and mineral recovery. The lab is led by Prof. Raquel Quatrini, author of over 80 scientific articles and co-editor of the first book on acidophile microbiology.

Lab Members

Research Associate Simón Beard Borquez


Postdoctoral fellow Francisco Issotta Contardo

Pedro Sepúlveda - Rebolledo

Dilanaz Arisan


PhD student, DRBC-USS Camila Rojas Villalobos

Sofía Reyes Impellizzeri

Abraham Zapata Araya

Aljandro Nicolás Pinilla Ojeda (PhageLab)

Celia Larrea Duharte


PhD student, DRIM-USS Gustavo Castro Toro

Estefanía Tisalema Guanopatín

PhD student, DRING-USS

Daniela Jara Henríquez (USS-Concepción)

Master, MBIM-USS

Catalina Lopez Kleim


Undergraduate, BIOQ-USS Catalina Muñoz Sarmiento

Guillermo Tapia Donoso

Noemí Urrea Saray

Catalina Gallardo Espíndola


Undergraduate, BIOTEC-UTEM Camilo Alarcón Barrera


Lab manager Héctor Carrasco Gallardo


Research assistant Gabriel Vergara

Priscilla Bucarey


Grants

FONDECYT-1221035: Acidic microbiomes as model systems in eco-evolutionary studies of community assembly processes (Principal Investigator)
EXPLORACION-13220230: Molecular delivery platform based on lipidic nanoparticles for acid mine drainage (AMD) microbial communities engineering and control: proof of concept (Alternate Director)
FONDECYT-1241529: Physical heterogeneity in biomining biofilms: Towards deciphering extracellular polymer production and the role of diffusible signal factors (Coinvestigator)

Collaborations

Diez B | Santiago, Chile - Universidad Mayor
Vera M | Santiago, Chile -Pontificia Universidad Católica de Chile
Moya-Beltrán A | Santiago, Chile - Universidad Tecnológica Metropolitana
Castro M | Concepción, Chile - Universidad de Concepción
Johnson DB | Bangor, UK - University of Bangor
Kucera J | Czech Republic - Masaryk University
Bertilsson S | Uppsalla, Sweden - Swedish University of Agricultural Sciences
Paredes-Sabja D | Texas, US - A&M University
Pérez-Rueda E | Mérida, Mexico - Universidad Nacional Autónoma de México
Giaveno A, Ulloa R | Neuquén, Argentina - Universidad Nacional del Comahue
Temporetti P | Bariloche, Argentina - Universidad Nacional del Comahue
M.C. Dieguez | Bariloche, Argentina - Universidad Nacional del Comahue

Latest Publication

Novel metal sites revealed by spectroscopic and structural characterization of the ferric uptake regulator from Acidithiobacillus ferrooxidans

Argandona, Yerko; Olivos, Andrea; Obando, Patricia; Imas, Francisco; Pohl, Ehmke; Quatrini, Raquel; Arenas-Salinas, Mauricio

MOBHunter: a data integration platform for identification and classification of mobile genetic elements in microbial genomes

Rojas-Villalobos, Camila; Ossandon, Francisco J.; Castillo-Vilcahuaman, Camila; Sepulveda-Rebolledo, Pedro; Castro-Salinas, David; Zapata-Araya, Abraham; Arisan, Dilanaz; Perez-Acle, Tomas; Issotta, Francisco; Quatrini, Raquel; Moya-Beltran, Ana

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